Package: noisyr
Type: Package
Title: Noise Quantification in High Throughput Sequencing Output
Version: 1.1.0
Authors@R: c(
            person("Ilias", "Moutsopoulos", , "im383@cam.ac.uk", c("aut", "cre")),
            person("Irina", "Mohorianu", , "iim22@cam.ac.uk", role = c("aut","ctb")),
            person("Hajk-Georg", "Drost", , "hajk-georg.drost@tuebingen.mpg.de", role="ctb"),
            person("Elze", "Lauzikaite", , "el523@cam.ac.uk", role = "ctb")
            )
Maintainer: Ilias Moutsopoulos <im383@cam.ac.uk>
Description: Quantifies and removes technical noise from
        high-throughput sequencing data. Two approaches are used, one
        based on the count matrix, and one using the alignment BAM
        files directly. Contains several options for every step of the
        process, as well as tools to quality check and assess the
        stability of output.
Depends: R (>= 3.1.2)
Imports: utils, grDevices, tibble, dplyr, magrittr, ggplot2,
        preprocessCore, IRanges, GenomicRanges, Rsamtools, philentropy,
        doParallel, foreach
Suggests: testthat, roxygen2, knitr, rmarkdown
License: GPL-2
Encoding: UTF-8
URL: https://github.com/Core-Bioinformatics/noisyR
BugReports: https://github.com/Core-Bioinformatics/noisyR/issues
RoxygenNote: 7.1.1
VignetteBuilder: knitr
Config/pak/sysreqs: cmake libbz2-dev liblzma-dev xz-utils zlib1g-dev
Repository: https://core-bioinformatics.r-universe.dev
Date/Publication: 2021-10-01 11:55:21 UTC
RemoteUrl: https://github.com/core-bioinformatics/noisyr
RemoteRef: HEAD
RemoteSha: 0c4b3b1f13a7fd88cfda969b7191647faadf6590
NeedsCompilation: no
Packaged: 2026-10-10 08:31:53 UTC; root
Author: Ilias Moutsopoulos [aut, cre],
  Irina Mohorianu [aut, ctb],
  Hajk-Georg Drost [ctb],
  Elze Lauzikaite [ctb]